Publications

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis.

Curion F. et al, (2024), Genome Biol, 25

Author Correction: C16orf72/HAPSTR1/TAPR1 functions with BRCA1/Senataxin to modulate replication-associated R-loops and confer resistance to PARP disruption.

Sharma AB. et al, (2023), Nat Commun, 14

Detailed Analysis of ITPR1 Missense Variants Guides Diagnostics and Therapeutic Design.

Tolonen JP. et al, (2023), Mov Disord

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs.

Weeratunga P. et al, (2023), Nat Commun, 14

Author Correction: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture.

Downes DJ. et al, (2023), Nat Protoc

Constructing custom-made radiotranscriptomic signatures of vascular inflammation from routine CT angiograms: a prospective outcomes validation study in COVID-19.

Kotanidis CP. et al, (2022), Lancet Digit Health, 4, e705 - e716

Gliotransmission of D-serine promotes thirst-directed behaviors in Drosophila.

Park A. et al, (2022), Curr Biol, 32, 3952 - 3970.e8

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.

Li H. et al, (2022), Science, 375

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity.

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium. Electronic address: julian.knight@well.ox.ac.uk None. and COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None., (2022), Cell, 185, 916 - 938.e58

Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture.

Downes DJ. et al, (2022), Nat Protoc

Autosomal Recessive Cerebellar Atrophy and Spastic Ataxia in Patients With Pathogenic Biallelic Variants in GEMIN5.

Rajan DS. et al, (2022), Front Cell Dev Biol, 10

Integration of single-cell RNA-Seq and CyTOF data characterises heterogeneity of rare cell subpopulations

Repapi E. et al, (2022), F1000Research, 11

Phenotypic manifestation of α-synuclein strains derived from Parkinson's disease and multiple system atrophy in human dopaminergic neurons.

Tanudjojo B. et al, (2021), Nat Commun, 12

Germline and somatic genetic variants in the p53 pathway interact to affect cancer risk, progression, and drug response.

Zhang P. et al, (2021), Cancer Res

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.

Lovell JT. et al, (2021), Nature, 590, 438 - 444

Exhausted CD4+ T Cells during Malaria Exhibit Reduced mTORc1 Activity Correlated with Loss of T-bet Expression.

Villegas-Mendez A. et al, (2020), J Immunol, 205, 1608 - 1619

Correction of amyotrophic lateral sclerosis related phenotypes in induced pluripotent stem cell-derived motor neurons carrying a hexanucleotide expansion mutation in C9orf72 by CRISPR/Cas9 genome editing using homology-directed repair.

Ababneh NA. et al, (2020), Hum Mol Genet

Correction: Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling.

Ilott NE. et al, (2020), ISME J, 14

An ontogenetic switch drives the positive and negative selection of B cells.

Xu X. et al, (2020), Proc Natl Acad Sci U S A, 117, 3718 - 3727

Embryonic progenitor pools generate diversity in fine-scale excitatory cortical subnetworks.

Ellender TJ. et al, (2019), Nat Commun, 10

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